Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection-Reference-Cited by-同舟云学术

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection

Published:2019-04-01 Issue:4 Volume:8 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:

Author:

Ohta Tazro¹^ORCID,Tanjo Tomoya²^ORCID,Ogasawara Osamu³^ORCID

Affiliation:

1. Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, Mishima, Shizuoka 411–8540, Japan

2. National Institute of Informatics, Research Organization of Information and Systems, Tokyo 101–8430, Japan

3. DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka 411–8540, Japan

Funder

Japan Science and Technology Agency

Core Research for Evolutional Science and Technology

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://academic.oup.com/gigascience/article-pdf/8/4/giz052/28506537/giz052.pdf

Reference58 articles.

1. Core services: Reward bioinformaticians;Chang;Nature,2015

2. Toward effective software solutions for big biology;Prins;Nat Biotechnol,2015

3. Docker: Lightweight Linux containers for consistent development and deployment;Merkel;Linux J,2014

4. The impact of Docker containers on the performance of genomic pipelines;Di Tommaso;PeerJ,2015

5. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update;Afgan;Nucleic Acids Res,2018

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. CMK: Enhancing Resource Usage Monitoring across Diverse Bioinformatics Workflow Management Systems;Journal of Grid Computing;2024-08-01

2. Nanopore sequencing data analysis using Microsoft Azure cloud computing service;PLOS ONE;2022-12-02

3. Transcriptome annotation in the cloud: complexity, best practices, and cost;GigaScience;2021-01-29

4. Establishment and application of information resource of mutant mice in RIKEN BioResource Research Center;Laboratory Animal Research;2021-01-18

5. Temporal Automaton RVTI-Grammar for the Diagrammatic Design Workflow Models Analysis;2020 IEEE 14th International Conference on Application of Information and Communication Technologies (AICT);2020-10-07