The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Author:

Afgan Enis1,Baker Dannon1,Batut Bérénice2,van den Beek Marius3,Bouvier Dave4,Čech Martin4,Chilton John4,Clements Dave1,Coraor Nate4,Grüning Björn A25ORCID,Guerler Aysam1,Hillman-Jackson Jennifer4,Hiltemann Saskia6,Jalili Vahid7,Rasche Helena2,Soranzo Nicola8,Goecks Jeremy7,Taylor James1,Nekrutenko Anton4,Blankenberg Daniel9ORCID

Affiliation:

1. Department of Biology, Johns Hopkins University, Baltimore, MD, USA

2. Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany

3. Institut Curie, PSL Research University, Paris, France

4. Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA

5. Center for Biological Systems Analysis (ZBSA), University of Freiburg, Freiburg, Germany

6. Department of Pathology, Erasmus Medical Center, Rotterdam, The Netherlands

7. Department of Biomedical Engineering, Oregon Health and Science University, OR, USA

8. Earlham Institute, Norwich Research Park, Norwich, UK

9. Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA

Funder

National Institutes of Health

NSF

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference42 articles.

1. Galaxy: a platform for interactive large-scale genome analysis;Giardine;Genome Res.,2005

2. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly;Blankenberg;Genome Res.,2007

3. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update;Afgan;Nucleic Acids Res.,2016

4. Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors;Yang;Nucleic Acids Res.,2017

5. SLURM: Simple Linux Utility for Resource Management;Yoo,2003

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