ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C-Reference-Cited by-同舟云学术

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ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Published:2019-05-22 Issue:1 Volume:20 Page:
ISSN:1474-760X
Container-title:Genome Biology
language:en
Short-container-title:Genome Biol

Author:

Ben Zouari Yousra,Molitor Anne M.,Sikorska Natalia,Pancaldi Vera,Sexton Tom^ORCID

Funder

European Research Council

ATIP-Avenir

Agence Nationale de la Recherche

Region Grand Est

IDEX University of Strasbourg

Institut National Du Cancer

Fondation pour la Recherche Médicale

Fondation Toulouse Cancer Sante

Les Laboratories Pierre Fabre

Institut National de la Santé et de la Recherche Médicale

Publisher

Springer Science and Business Media LLC

Link

http://link.springer.com/content/pdf/10.1186/s13059-019-1706-3.pdf

Reference71 articles.

1. Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science. 2002;295:1306–11.

2. Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, et al. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Res. 2006;16:1299–309.

3. Fullwood MJ, Liu MH, Pan YF, Liu J, Xu H, Mohamed YB, et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature. 2009;462:58–64.

4. Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009;326:289–93.

5. van de Werken HJ, Landan G, Holwerda SJ, Hoichman M, Klous P, Chachik R, et al. Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nat Methods. 2012;9:969–72.

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