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Speeding Up Percolator

Published:2019-08-13 Issue:9 Volume:18 Page:3353-3359
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Halloran John T.¹,Zhang Hantian²,Kara Kaan²,Renggli Cédric²,The Matthew³,Zhang Ce²,Rocke David M.¹,Käll Lukas³^ORCID,Noble William Stafford^ORCID

Affiliation:

1. Department of Public Health Sciences, University of California, Davis, Davis, California 95616, United States

2. Department of Computer Science, ETH Zurich, Zurich 8092, Switzerland

3. Science for Life Laboratory, KTH—Royal Institute of Technology, Solna 171 65, Sweden

Funder

National Center for Advancing Translational Sciences

Vetenskapsr?det

National Institute of General Medical Sciences

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.9b00288

Reference37 articles.

1. A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

2. Accurate and Sensitive Peptide Identification with Mascot Percolator

3. Semisupervised Model-Based Validation of Peptide Identifications in Mass Spectrometry-Based Proteomics

4. Faster SEQUEST Searching for Peptide Identification from Tandem Mass Spectra

5. Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications

Cited by 8 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. AttnPep: A Self-Attention-Based Deep Learning Method for Peptide Identification in Shotgun Proteomics;Journal of Proteome Research;2024-01-22

2. A Comparative Analysis of Data Analysis Tools for Data-Independent Acquisition Mass Spectrometry;Molecular & Cellular Proteomics;2023-09

3. An Introduction to Mass Spectrometry-Based Proteomics;Journal of Proteome Research;2023-06-01

4. Sex-specific responses to slow progressive pressure overload in a large animal model of HFpEF;American Journal of Physiology-Heart and Circulatory Physiology;2022-10-01

5. TIDD: tool-independent and data-dependent machine learning for peptide identification;BMC Bioinformatics;2022-03-30

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