Faster SEQUEST Searching for Peptide Identification from Tandem Mass Spectra-Reference-Cited by-同舟云学术

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Faster SEQUEST Searching for Peptide Identification from Tandem Mass Spectra

Published:2011-07-29 Issue:9 Volume:10 Page:3871-3879
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Diament Benjamin J.¹,Noble William Stafford²

Affiliation:

1. Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States

2. Department of Genome Sciences and Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/pr101196n

Reference28 articles.

1. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

2. Analysis and validation of proteomic data generated by tandem mass spectrometry

3. A Fast SEQUEST Cross Correlation Algorithm

4. Rapid and Accurate Peptide Identification from Tandem Mass Spectra

5. Probability-based protein identification by searching sequence databases using mass spectrometry data

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1. Predicting peptide properties from mass spectrometry data using deep attention-based multitask network and uncertainty quantification;2024-08-22

2. Sequence-to-sequence translation from mass spectra to peptides with a transformer model;Nature Communications;2024-07-30

3. Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors Into Peptide Identification;Molecular & Cellular Proteomics;2024-07

4. A learned score function improves the power of mass spectrometry database search;Bioinformatics;2024-06-28

5. Assessment of false discovery rate control in tandem mass spectrometry analysis using entrapment;2024-06-03

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