Stable recombination hotspots in birds

Author:

Singhal Sonal12,Leffler Ellen M.34,Sannareddy Keerthi3,Turner Isaac4,Venn Oliver4,Hooper Daniel M.5,Strand Alva I.1,Li Qiye6,Raney Brian7,Balakrishnan Christopher N.8,Griffith Simon C.9,McVean Gil4,Przeworski Molly12

Affiliation:

1. Department of Biological Sciences, Columbia University, New York, NY 10027, USA.

2. Department of Systems Biology, Columbia University, New York, NY 10032, USA.

3. Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.

4. Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.

5. Committee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, USA.

6. China National Genebank, BGI-Shenzhen, Shenzhen 518083, China.

7. Center for Biomolecular Science and Engineering, University of California–Santa Cruz, Santa Cruz, CA 95064, USA.

8. Department of Biology, East Carolina University, Greenville, NC 27858, USA.

9. Department of Biological Sciences, Macquarie University, Sydney, NSW 2109, Australia.

Abstract

Recombination: The birds and the yeast Apes and mice have a specific gene, PRDM9 , that is associated with genomic regions with high rates of recombination, called hotspots. In species with PRDM9 , hotspots move rapidly within the genome, varying among populations and closely related species (see the Perspective by Lichten). To investigate recombination hotspots in species lacking PRDM9 , Singhal et al. examined bird genomes, which lack a PRDM9 gene. They looked closely at the genomes of finch species and found that recombination was localized to the promoter regions of genes and highly conserved over millions of years. Similarly, Lam and Keeney examined recombination localization within yeast, which also lacks PRDM9 . They found a similar more-or-less fixed pattern of hotspots. Thus, recombination in species lacking a PRDM9 gene shows similar patterns of hotspot localization and evolution. Science , this issue p. 913 , p. 928 ; see also p. 932

Funder

Wellcome Trust

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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