Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness-Reference-Cited by-同舟云学术

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness

Published:2020-05-29 Issue:5 Volume:15 Page:e0233509
ISSN:1932-6203
Container-title:PLOS ONE
language:en
Short-container-title:PLoS ONE

Author:

Yang Jordan,Naik Nandita,Patel Jagdish Suresh^ORCID,Wylie Christopher S.,Gu Wenze^ORCID,Huang Jessie,Ytreberg F. Marty,Naik Mandar T.,Weinreich Daniel M.,Rubenstein Brenda M.^ORCID

Funder

National Science Foundation

National Institutes of Health

Publisher

Public Library of Science (PLoS)

Subject

Multidisciplinary

Reference93 articles.

1. The distribution of fitness effects of new mutations;A Eyre-Walker;Nature Reviews Genetics,2007

2. Understanding the evolutionary fate of finite populations: The dynamics of mutational effects;OK Silander;PLOS Biology,2007

3. Mutational effects and the evolution of new protein functions;M Soskine;Nature Reviews Genetics,2010

4. The coming of age of de novo protein design;PS Huang;Nature,2016

5. Design by directed evolution;FH Arnold;Accounts of Chemical Research,1998

Cited by 29 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Computational design towards a boiling-resistant single-chain sweet protein monellin;Food Chemistry;2024-05

2. Revisiting the hydrolysis of ampicillin catalyzed by Temoneira‐1 β‐lactamase, and the effect of Ni(II), Cd(II) and Hg(II);Protein Science;2023-11-21

3. Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability;BMC Bioinformatics;2023-11-12

4. High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST;Journal of the American Chemical Society;2023-10-10

5. Predicting binding affinity changes from long‐distance mutations using molecular dynamics simulations and Rosetta;Proteins: Structure, Function, and Bioinformatics;2023-03-02