The Complete Genome Sequence of Telfairia occidentalis, the African Fluted Pumpkin

Author:

Pirro Stacy1,Obembe Olawole2

Affiliation:

1. Iridian Genomes

2. Covenant University

Abstract

Telfairia occidentalis is a tropical vine grown in West Africa as a leaf vegetable and for its edible seeds. We present the whole genome sequence of this species. Illumina sequencing was performed on a leaf tissue sample from a single cultivated plant. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR14834394) and Genome Assembly (JAOANK000000000).

Publisher

Naturalis Historia Publishing

Reference5 articles.

1. Ragtag: Reference-Guided Genome Assembly Correction and Scaffolding;M. Alonge,2020

2. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing;Anton Bankevich;Journal of Computational Biology,2012

3. Trimmomatic: A Flexible Trimmer for Illumina Sequence Data;Anthony M. Bolger;Bioinformatics,2014

4. Zanfona, a genome assembly finishing tool for paired-end Illumina reads;M. Kieras,2021

5. Fluted Pumpkin, Telfairia occidentalis: West African Vegetable Crop;Bosa E. Okoli;Economic Botany,1983

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