Metabolite profiling of human renal cell carcinoma reveals tissue-origin dominance in nutrient availability

Author:

Abbott Keene L.123,Ali Ahmed23,Reinfeld Bradley I.456,Deik Amy3,Subudhi Sonu7ORCID,Landis Madelyn D.5,Hongo Rachel A.5,Young Kirsten L.5,Kunchok Tenzin8,Nabel Christopher S.2910,Crowder Kayla D.8,Kent Johnathan R.11,Madariaga Maria Lucia L.11,Jain Rakesh K.7,Beckermann Kathryn E.5,Lewis Caroline A.812,Clish Clary B.3ORCID,Muir Alexander13,Rathmell W. Kimryn514,Rathmell Jeffrey C.1514ORCID,Vander Heiden Matthew G.12316ORCID

Affiliation:

1. Department of Biology, Massachusetts Institute of Technology

2. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology

3. Broad Institute of MIT and Harvard

4. Medical Scientist Training Program, Vanderbilt University

5. Department of Medicine, Vanderbilt University Medical Center (VUMC)

6. Graduate Program in Cancer Biology, Vanderbilt University

7. Steele Laboratories of Tumor Biology, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School

8. Whitehead Institute for Biomedical Research

9. Department of Medicine, Massachusetts General Hospital

10. Harvard Medical School

11. Department of Surgery, University of Chicago Medicine

12. UMass Chan Medical School, Program in Molecular Medicine

13. Ben May Department of Cancer Research, University of Chicago

14. Vanderbilt Center for Immunobiology and Vanderbilt-Ingram Cancer Center

15. Department of Pathology, Microbiology and Immunology, VUMC

16. Dana-Farber Cancer Institute

Abstract

The tumor microenvironment is a determinant of cancer progression and therapeutic efficacy, with nutrient availability playing an important role. Although it is established that the local abundance of specific nutrients defines the metabolic parameters for tumor growth, the factors guiding nutrient availability in tumor compared to normal tissue and blood remain poorly understood. To define these factors in renal cell carcinoma (RCC), we performed quantitative metabolomic and comprehensive lipidomic analyses of tumor interstitial fluid (TIF), adjacent normal kidney interstitial fluid (KIF), and plasma samples collected from patients. TIF nutrient composition closely resembles KIF, suggesting that tissue-specific factors unrelated to the presence of cancer exert a stronger influence on nutrient levels than tumor-driven alterations. Notably, select metabolite changes consistent with known features of RCC metabolism are found in RCC TIF, while glucose levels in TIF are not depleted to levels that are lower than those found in KIF. These findings inform tissue nutrient dynamics in RCC, highlighting a dominant role of non-cancer driven tissue factors in shaping nutrient availability in these tumors.

Publisher

eLife Sciences Publications, Ltd

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