Efficient Distributed Parallel Aligning Reads and Reference Genome with Many Repetitive Subsequences Using Compact de Bruijn Graph-Reference-Cited by-同舟云学术

Efficient Distributed Parallel Aligning Reads and Reference Genome with Many Repetitive Subsequences Using Compact de Bruijn Graph

Published:2021-12-10 Issue: Volume: Page:
ISSN:
Container-title:2021 12th International Symposium on Parallel Architectures, Algorithms and Programming (PAAP)
language:
Short-container-title:

Author:

Li Yao¹,Zhong Cheng¹,Chen Danyang¹,Zhang Jinxiong¹,Yin Mengxiao¹

Affiliation:

1. School of Computer, Electronics and Information, Distributed Computing Technology in Guangxi Universities Guangxi University,Key Laboratory of Parallel,Nanning,China

Funder

National Natural Science Foundation of China

Publisher

IEEE

Link

http://xplorestaging.ieee.org/ielx7/9720298/9720304/09720451.pdf?arnumber=9720451

Reference15 articles.

1. Streaming Distributed DNA Sequence Alignment Using Apache Spark

2. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM;li;ArXiv Preprint,2013

3. Read mapping on de Bruijn graphs

4. deBGA: read alignment with de Bruijn graph-based seed and extension

5. Aligning Short Reads with Many Repetitive Subsequences Using Region Selection and Compact de Bruijn Graph;li;Journal of Chinese Computer Systems,2020

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Research on distributed model forecasting parallel framework based on adaptive genetic algorithm;2023 IEEE 3rd International Conference on Electronic Technology, Communication and Information (ICETCI);2023-05-26

2. Neural Network Reasoning Algorithm of Large-Scale Gragh Based on Parallel Computing;2022 19th International Computer Conference on Wavelet Active Media Technology and Information Processing (ICCWAMTIP);2022-12-16

3. Parallel Accelerating Ultra-Long Read Alignment by Vertical Partitioning Data;2022 IEEE 13th International Symposium on Parallel Architectures, Algorithms and Programming (PAAP);2022-11-25