Parallel Accelerating Ultra-Long Read Alignment by Vertical Partitioning Data-Reference-Cited by-同舟云学术

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Parallel Accelerating Ultra-Long Read Alignment by Vertical Partitioning Data

Published:2022-11-25 Issue: Volume: Page:
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Container-title:2022 IEEE 13th International Symposium on Parallel Architectures, Algorithms and Programming (PAAP)
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Author:

Pan Deng¹,Zhong Cheng¹,Chen Danyang¹,Zhang Jinxiong²,Yang Feng²

Affiliation:

1. Guangxi University,Key Laboratory of Parallel Distributed Computing Technology in Guangxi Universities,School of Computer, Electronics and Information,Nanning,Guangxi,China

2. Guangxi University,Key Laboratory of Parallel Distributed Computing,School of Computer, Electronics and Information,Nanning,Guangxi,China

Funder

National Natural Science Foundation of China

Publisher

IEEE

Link

http://xplorestaging.ieee.org/ielx7/10009901/10009922/10010526.pdf?arnumber=10010526

Reference15 articles.

1. Efficient Distributed Parallel Aligning Reads and Reference Genome with Many Repetitive Subsequences Using Compact de Bruijn Graph

2. Vargas: heuristic-free alignment for assessing linear and graph read aligners

3. Nanopore sequencing and assembly of a human genome with ultra-long reads

4. Parallel Algorithm for Long-read Alignment Using Two-level Global and Local Hash Index Filtering (in Chinese);pan;Journal of Chinese Computer Systems,2022

5. Fast gap-affine pairwise alignment using the wavefront algorithm

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