Read mapping on de Bruijn graphs-Reference-Cited by-同舟云学术

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Read mapping on de Bruijn graphs

Published:2016-06-16 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Limasset Antoine,Cazaux Bastien,Rivals Eric,Peterlongo Pierre

Funder

Agence Nationale de la Recherche

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-1103-9

Reference26 articles.

1. Bradnam KR, Fass JN, et al.Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. GigaScience. 2013; 2:10. [doi: 10.1186/2047-217X-2-10 ].

2. Nagarajan N, Pop M. Parametric complexity of sequence assembly: theory and applications to next generation sequencing. J Comput Biol. 2009; 16(7):897–908. [doi: 10.1089/cmb.2009.0005 ].

3. Chaisson MJ, Pevzner PA. Short read fragment assembly of bacterial genomes. Genome Res. 2008; 18(2):324–30. [doi: 10.1101/gr.7088808 ].

4. Myers EW, Sutton GG, et al.A whole-genome assembly of Drosophila. Science (New York, N.Y.) 2000; 287(5461):2196–204. [doi: 10.1126/science.287.5461.2196 ].

5. Myers EW. The fragment assembly string graph. Bioinformatics. 2005; 21(Suppl 2):79–85. [doi: 10.1093/bioinformatics/bti1114 ].

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