Optimizing taxon addition order and branch lengths in the construction of phylogenetic trees using maximum likelihood-Reference-Cited by-同舟云学术

Optimizing taxon addition order and branch lengths in the construction of phylogenetic trees using maximum likelihood

Published:2020-04 Issue:02 Volume:18 Page:2050003
ISSN:0219-7200
Container-title:Journal of Bioinformatics and Computational Biology
language:en
Short-container-title:J. Bioinform. Comput. Biol.

Author:

Yoon Yourim¹,Kim Yong-Hyuk²^ORCID

Affiliation:

1. Department of Computer Engineering, College of Information Technology, Gachon University, 1342 Seongnamdaero, Sujeong-gu, Seongnam-si, Gyeonggi-do 13120, Republic of Korea

2. School of Software, Kwangwoon University, 20 Kwangwoon-ro, Nowon-gu, Seoul 01897, Republic of Korea

Abstract

Taxon addition order and branch lengths are optimized by genetic algorithms (GAS) within the fastDNAml algorithm for constructing phylogenetic trees of high likelihood. Results suggest that optimizing the order in which taxa are added improves the likelihood of the resulting trees.

Funder

National Research Foundation of Korea

Publisher

World Scientific Pub Co Pte Lt

Subject

Computer Science Applications,Molecular Biology,Biochemistry

Link

https://www.worldscientific.com/doi/pdf/10.1142/S0219720020500031

Reference57 articles.

1. Computational complexity of inferring phylogenies from dissimilarity matrices

2. Evolutionary trees from DNA sequences: A maximum likelihood approach

3. ESTIMATION OF TIME OF DIVERGENCE FROM PHYLOGENETIC STUDIES

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