The International HapMap Project Web site: Figure 1.

Author:

Thorisson Gudmundur A.,Smith Albert V.,Krishnan Lalitha,Stein Lincoln D.

Abstract

The HapMap Web site at http://www.hapmap.org is the primary portal to genotype data produced as part of the International Haplotype Map Project. In phase I of the project, >1.1 million SNPs were genotyped in 270 individuals from four worldwide populations. The HapMap Web site provides researchers with a number of tools that allow them to analyze the data as well as download data for local analyses. This paper presents step-by-step guides to using those tools, including guides for retrieving genotype and frequency data, picking tag-SNPs for use in association studies, viewing haplotypes graphically, and examining marker-to-marker LD patterns.

Publisher

Cold Spring Harbor Laboratory

Subject

Genetics (clinical),Genetics

Reference8 articles.

1. Haploview: analysis and visualization of LD and haplotype maps

2. An Overview of Ensembl

3. Shopping in the genome market with EnsMart

4. The International HapMap Consortium. 2005. A haplotype map of the human genome. Nature (in press).

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