Evaluation of crowdsourced mortality prediction models as a framework for assessing AI in medicine

Author:

Bergquist Timothy,Schaffter Thomas,Yan Yao,Yu Thomas,Prosser Justin,Gao Jifan,Chen Guanhua,Charzewski Łukasz,Nawalany Zofia,Brugere Ivan,Retkute Renata,Prusokas Alidivinas,Prusokas Augustinas,Choi Yonghwa,Lee Sanghoon,Choe Junseok,Lee Inggeol,Kim Sunkyu,Kang Jaewoo,Mooney Sean D.,Guinney JustinORCID,

Abstract

AbstractApplications of machine learning in healthcare are of high interest and have the potential to significantly improve patient care. Yet, the real-world accuracy and performance of these models on different patient subpopulations remains unclear. To address these important questions, we hosted a community challenge to evaluate different methods that predict healthcare outcomes. To overcome patient privacy concerns, we employed a Model-to-Data approach, allowing citizen scientists and researchers to train and evaluate machine learning models on private health data without direct access to that data. We focused on the prediction of all-cause mortality as the community challenge question. In total, we had 345 registered participants, coalescing into 25 independent teams, spread over 3 continents and 10 countries. The top performing team achieved a final area under the receiver operator curve of 0.947 (95% CI 0.942, 0.951) and an area under the precision-recall curve of 0.487 (95% CI 0.458, 0.499) on patients prospectively collected over a one year observation of a large health system. Post-hoc analysis after the challenge revealed that models differ in accuracy on subpopulations, delineated by race or gender, even when they are trained on the same data and have similar accuracy on the population. This is the largest community challenge focused on the evaluation of state-of-the-art machine learning methods in a healthcare system performed to date, revealing both opportunities and pitfalls of clinical AI.

Publisher

Cold Spring Harbor Laboratory

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