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Anduril 2: upgraded large-scale data integration framework

Published:2019-02-21 Issue:19 Volume:35 Page:3815-3817
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Cervera Alejandra¹^ORCID,Rantanen Ville¹,Ovaska Kristian¹,Laakso Marko¹,Nuñez-Fontarnau Javier²,Alkodsi Amjad¹,Casado Julia¹,Facciotto Chiara¹,Häkkinen Antti¹,Louhimo Riku³,Karinen Sirkku¹,Zhang Kaiyang¹,Lavikka Kari¹,Lyly Lauri¹,Pal Singh Maninder¹,Hautaniemi Sampsa¹

Affiliation:

1. Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki

2. Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland

3. Finnish Institute of Occupational Health, Helsinki, Finland

Abstract

Abstract Summary Anduril is an analysis and integration framework that facilitates the design, use, parallelization and reproducibility of bioinformatics workflows. Anduril has been upgraded to use Scala for pipeline construction, which simplifies software maintenance, and facilitates design of complex pipelines. Additionally, Anduril’s bioinformatics repository has been expanded with multiple components, and tutorial pipelines, for next-generation sequencing data analysis. Availabilityand implementation Freely available at http://anduril.org. Supplementary information Supplementary data are available at Bioinformatics online.

Funder

European Union’s Horizon 2020

Academy of Finland

Sigrid Jusélius Foundation

Finnish Cancer Associations

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/19/3815/30061517/btz133.pdf

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