SePIA: RNA and small RNA sequence processing, integration, and analysis-Reference-Cited by-同舟云学术

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SePIA: RNA and small RNA sequence processing, integration, and analysis

Published:2016-05-20 Issue:1 Volume:9 Page:
ISSN:1756-0381
Container-title:BioData Mining
language:en
Short-container-title:BioData Mining

Author:

Icay Katherine,Chen Ping,Cervera Alejandra,Rantanen Ville,Lehtonen Rainer,Hautaniemi Sampsa

Publisher

Springer Science and Business Media LLC

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Genetics,Molecular Biology,Biochemistry

Link

http://link.springer.com/content/pdf/10.1186/s13040-016-0099-z

Reference77 articles.

1. McPherson JD. Next-generation gap. Nat Methods. 2009; 6:2–5.

2. Giurato G, De Filippo MR, Rinaldi A, Hashim A, Nassa G, Ravo M, et al.iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-seq. BMC Bioinformatics. 2013; 14:362.

3. Goncalves A, Tikhonov A, Brazma A, Kapushesky M. A pipeline for RNA-seq data processing and quality assessment. Bioinformatics. 2011; 27:867–9.

4. Zhao W, Liu W, Tian D, Tang B, Wang Y, Yu C, et al.wapRNA: a web-based application for the processing of RNA sequences. Bioinformatics. 2011; 27:3076–7.

5. Ovaska K, Laakso M, Haapa-Paananen S, Louhimo R, Chen P, Aittomaki V, et al.Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme. Genome Med. 2010; 2:65.

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