Reprever: resolving low-copy duplicated sequences using template driven assembly

Author:

Kim Sangwoo1,Medvedev Paul1,Paton Tara A.1,Bafna Vineet1

Affiliation:

1. Department of Computer Science and Engineering, 9500 Gilman Dr University of California at San Diego, La Jolla, CA 92122, USA and 2Genetic Analysis Facility, The Centre for Applied Genomics, The Hospital for Sick Children, 101 College Street, Toronto, ON M5G 1L7, Canada

Publisher

Oxford University Press (OUP)

Subject

Genetics

Reference38 articles.

1. Fine-scale structural variation of the human genome;Tuzun;Nat. Genet.,2005

2. Paired-end mapping reveals extensive structural variation in the human genome;Korbel;Science,2007

3. Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer;Bashir;PLoS Comput. Biol.,2008

4. Detecting copy number variation with mated short reads;Medvedev;Genome Res.,2010

5. High-resolution mapping of copy-number alterations with massively parallel sequencing;Chiang;Nat. Methods,2009

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