Draft Genome Sequences of Multidrug-Resistant Shiga Toxin-Producing Escherichia coli O116:H25 Strains from Ready-to-Eat Foods Sold in Lagos, Nigeria-Reference-Cited by-同舟云学术

Draft Genome Sequences of Multidrug-Resistant Shiga Toxin-Producing Escherichia coli O116:H25 Strains from Ready-to-Eat Foods Sold in Lagos, Nigeria

Published:2022-08-18 Issue:8 Volume:11 Page:
ISSN:2576-098X
Container-title:Microbiology Resource Announcements
language:en
Short-container-title:Microbiol Resour Announc

Author:

Makinde Oluwadamilola M.¹²³,Van Wyk Deidré²,Ikhimiukor Odion O.⁴,Bezuidenhout Carlos²^ORCID,Adeleke Rasheed A.²^ORCID,Ezekiel Chibundu N.¹^ORCID

Affiliation:

1. Department of Microbiology, Babcock University, Ilishan Remo, Ogun State, Nigeria

2. Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa

3. Department of Biological Sciences, Southwestern University, Okun-Owa, Ogun State, Nigeria

4. Environmental Microbiology and Biotechnology Laboratory, Department of Microbiology, University of Ibadan, Ibadan, Oyo State, Nigeria

Abstract

Draft genomes of multidrug-resistant Shiga toxin-producing Escherichia coli (STEC) strains IPK9(1) and IKS1(2), which were isolated from ready-to-eat foods (kokoro and shawarma) sold in Lagos, Nigeria, are reported. The genomes possessed genetic determinants for virulence and the antibiotic resistance gene for macrolide-associated resistance mdf(A) . Ready-to-eat foods increase public health threats in Nigeria.

Publisher

American Society for Microbiology

Subject

Genetics,Immunology and Microbiology (miscellaneous),Molecular Biology

Link

https://journals.asm.org/doi/pdf/10.1128/mra.00314-22

Reference14 articles.

1. Bacterial contaminants and their antibiotic susceptibility patterns in ready‐to‐eat foods vended in Ogun state, Nigeria

2. Trimmomatic: a flexible trimmer for Illumina sequence data

3. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

4. NCBI prokaryotic genome annotation pipeline

5. ResFinder 4.0 for predictions of phenotypes from genotypes