BitMapper: an efficient all-mapper based on bit-vector computing-Reference-Cited by-同舟云学术

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BitMapper: an efficient all-mapper based on bit-vector computing

Published:2015-06-11 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Cheng Haoyu,Jiang Huaipan,Yang Jiaoyun,Xu Yun,Shang Yi

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/article/10.1186/s12859-015-0626-9/fulltext.html

Reference23 articles.

1. Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short dna sequences to the human genome. Genome Biol. 2009; 10(3):25.

2. Langmead B, Salzberg SL. Fast gapped-read alignment with bowtie 2. Nat Methods. 2012; 9(4):357–9.

3. Li H, Durbin R. Fast and accurate short read alignment with burrows–wheeler transform. Bioinformatics. 2009; 25(14):1754–60.

4. Marco-Sola S, Sammeth M, Guigó R, Ribeca P. The gem mapper: fast, accurate and versatile alignment by filtration. Nat Methods. 2012; 9(12):1185–8.

5. Weese D, Holtgrewe M, Reinert K. Razers 3: faster, fully sensitive read mapping. Bioinformatics. 2012; 28(20):2592–599.

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