Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection

Published:2016-02-24 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Zhang Qi,Zeng Xin,Younkin Sam,Kawli Trupti,Snyder Michael P.,Keleş Sündüz

Funder

National Institutes of Health

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-0957-1.pdf

Reference44 articles.

1. Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, et al. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genetics. 2008; 40(7):897–903.

2. Kharchenko PV, Tolstorukov MY, Park PJ. Design and analysis of ChIP-seq experiments for DNA-binding, proteins. Nat Biotechnol. 2008; 26(12):1351–9.

3. Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods. 2007; 4(8):651–7.

4. Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Genome-wide analysis of transcription factor binding sites based on ChIP-seq data. Nat Methods. 2008; 5(9):829–34.

5. Kuan PF, Chung D, Pan G, Thomson JA, Stewart R, Keleş S.A statistical framework for the analysis of ChIP-seq data. J Am Stat Assoc. 2011; 106(495):891–903.

Cited by 7 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Effector MoSDT1 enhances Magnaporthe oryzae virulence and plays a dual role in regulating rice defense;Plant Physiology;2024-07-09

2. Best practices for ChIP-seq and its data analysis;Rigor and Reproducibility in Genetics and Genomics;2024

3. INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants;Genome Biology;2021-08-23

4. INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants;2021-07-15

5. Theoretical characterisation of strand cross-correlation in ChIP-seq;BMC Bioinformatics;2020-09-22

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3