Second-generation PLINK: rising to the challenge of larger and richer datasets-Reference-Cited by-同舟云学术

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Second-generation PLINK: rising to the challenge of larger and richer datasets

Published:2015-02-25 Issue:1 Volume:4 Page:
ISSN:2047-217X
Container-title:GigaScience
language:en
Short-container-title:GigaSci

Author:

Chang Christopher C,Chow Carson C,Tellier Laurent CAM,Vattikuti Shashaank,Purcell Shaun M,Lee James J

Publisher

Oxford University Press (OUP)

Subject

Computer Science Applications,Health Informatics

Link

http://link.springer.com/content/pdf/10.1186/s13742-015-0047-8.pdf

Reference45 articles.

1. Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira M, Bender D, et al. Plink: A tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet. 2007; 81:559–75.

2. Browning B, Browning S. Improving the accuracy and efficiency of identity by descent detection in population data. Genetics. 2013; 194:459–71.

3. Howie B, Donnelly P, Marchini J. A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 2009; 5:1000529.

4. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The genome analysis toolkit: A mapreduce framework for analyzing next-generation dna sequencing data. Genome Res. 2010; 20:1297–303.

5. Danecek P, Auton A, Abecasis G, Albers C, Banks E, DePristo M, et al. The variant call format and vcftools. Bioinformatics. 2011; 27:2156–8.

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