SKESA: strategic k-mer extension for scrupulous assemblies
Author:
Funder
U.S. National Library of Medicine
Publisher
Springer Science and Business Media LLC
Link
http://link.springer.com/content/pdf/10.1186/s13059-018-1540-z.pdf
Reference49 articles.
1. Lugli GA, Milani L, Cand M, van Sinderen D, Ventura M. Megannotator: a user-friendly pipeline for microbial genomes assembly and annotation. FEMS Microbiol Lett. 2016;363(7). https://doi.org/10.1093/femsle/fnw049 .
2. Pina-Martins F, Vieira BM, Seabra SG, Batista D, Paulo OS. 4pipe4–a 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information. BMC Bioinformatics. 2016; 17:41. https://doi.org/10.1186/s12859-016-0892-1 .
3. Lai B, Wang F, Wang X, Duan L, Zhu H. Intemap: integrated metagenomic assembly pipeline for NGS short reads. BMC Bioinformatics. 2015; 16:244. https://doi.org/10.1186/s12859-015-0686-x .
4. Wolfinger MT, Fallmann J, Eggenhofer F, Amman F. Viennangs: a toolbox for building efficient next-generation sequencing analysis pipelines. F1000Res. 2015; 4:50. https://doi.org/10.12688/f1000research.6157.2 .
5. Tritt A, Eisen JA, Facciotti MT, Darling AE. An integrated pipeline for de novo assembly of microbial genomes. PLoS One. 2012; 7(9):42304. https://doi.org/10.1371/journal.pone.0042304 .
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