4Pipe4 – A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information-Reference-Cited by-同舟云学术

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4Pipe4 – A 454 data analysis pipeline for SNP detection in datasets with no reference sequence or strain information

Published:2016-01-19 Issue:1 Volume:17 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Pina-Martins Francisco,Vieira Bruno M.,Seabra Sofia G.,Batista Dora,Paulo Octávio S.

Funder

Fundação para a Ciência e a Tecnologia (PT)

Fundação para a Ciência e a Tecnologia

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-016-0892-1

Reference23 articles.

1. Schuster SC. Next-generation sequencing transforms today’s biology. Nat Methods. 2008;5:16–8.

2. Papanicolaou A, Stierli R, Ffrench-Constant RH, Heckel DG. Next generation transcriptomes for next generation genomes using est2assembly. BMC Bioinformatics. 2009;10:447.

3. Peterlongo P, Schnel N, Pisanti N, Sagot MF, Lacroix V. Identifying SNPs without a Reference Genome by Comparing Raw Reads. In: Chaves E, Lonardi S, editors. String Processing and Information Retrieval. Springer Berlin Heidelberg; 2010. p. 147-58.

4. Modesto IS, Miguel C, Pina-Martins F, Glushkova M, Veloso M, Paulo OS, et al. Identifying signatures of natural selection in cork oak (Quercus suber L.) genes through SNP analysis. Tree Genet Genomes. 2014;10:1645–60.

5. Savage AE, Kiemnec-Tyburczy KM, Ellison AR, Fleischer RC, Zamudio KR. Conservation and divergence in the frog immunome: pyrosequencing and de novo assembly of immune tissue transcriptomes. Gene. 2014;542:98–108.

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. SKESA: strategic k-mer extension for scrupulous assemblies;Genome Biology;2018-10-04

2. The science that’s never been cited;Nature;2017-12

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