Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501-Reference-Cited by-同舟云学术

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Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501

Published:2015 Issue:11 Volume:11 Page:3022-3032
ISSN:1742-206X
Container-title:Molecular BioSystems
language:en
Short-container-title:Mol. BioSyst.

Author:

Babaei Parizad¹²³⁴⁵,Marashi Sayed-Amir¹²³⁴⁵^ORCID,Asad Sedigheh¹²³⁴⁵

Affiliation:

1. Department of Biotechnology

2. College of Science

3. University of Tehran

4. Tehran

5. Iran

Abstract

We present a metabolic network model forPseudomonas stutzeriA1501 which is able to successfully predict its carbon and nitrogen metabolism.

Publisher

Royal Society of Chemistry (RSC)

Subject

Molecular Biology,Biotechnology

Link

http://pubs.rsc.org/en/content/articlepdf/2015/MB/C5MB00086F

Reference86 articles.

1. N. Beckloff , S.Starkenburg, T.Freitas and P.Chain, Microbial Systems Biology, Springer, 2012, pp. 471–503

2. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

3. Software platforms to facilitate reconstructing genome-scale metabolic networks

4. High-throughput generation, optimization and analysis of genome-scale metabolic models

5. KEGG: Kyoto Encyclopedia of Genes and Genomes

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1. Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12;BMC Genomics;2024-01-16

2. Reconstruction and metabolic profiling of the genome-scale metabolic network model of Pseudomonas stutzeri A1501;Synthetic and Systems Biotechnology;2023-12

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4. Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models;npj Systems Biology and Applications;2020-01-07

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