Software platforms to facilitate reconstructing genome-scale metabolic networks-Reference-Cited by-同舟云学术

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Software platforms to facilitate reconstructing genome-scale metabolic networks

Published:2013-11-18 Issue:1 Volume:16 Page:49-59
ISSN:1462-2912
Container-title:Environmental Microbiology
language:en
Short-container-title:Environ Microbiol

Author:

Hamilton Joshua J.¹,Reed Jennifer L.¹

Affiliation:

1. Department of Chemical and Biological Engineering; University of Wisconsin-Madison; Madison WI 53706 USA

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.12312/fullpdf

Reference84 articles.

1. The RAVEN Toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum;Agren;PLoS Comput Biol,2013

2. Gene Ontology: tool for the unification of biology;Ashburner;Nat Genet,2000

3. The RAST Server: rapid annotations using subsystems technology;Aziz;BMC Genomics,2008

4. An automated phenotype-driven approach (GeneForce) for refining metabolic and regulatory models;Barua;PLoS Comput Biol,2010

5. Energy balance for analysis of complex metabolic networks;Beard;Biophys J,2002

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5. merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models;Nucleic Acids Research;2022-06-13

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