Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Author:

Zhang Xingtan,Zhang Shengcheng,Zhao Qian,Ming RayORCID,Tang HaibaoORCID

Publisher

Springer Science and Business Media LLC

Subject

Plant Science

Reference49 articles.

1. Ekblom, R. & Wolf, J. B. A field guide to whole-genome sequencing, assembly and annotation. Evolut. Appl. 7, 1026–1042 (2014).

2. Deschamps, S. et al. A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping. Nat. Commun. 9, 4844 (2018).

3. Belser, C. et al. Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Nat. Plants 4, 879–887 (2018).

4. Lieberman-Aiden, E. et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326, 289–293 (2009).

5. Zhang, J. et al. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nat. Genet. 50, 1565–1573 (2018).

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