Towards standards for human fecal sample processing in metagenomic studies
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Published:2017-10-02
Issue:11
Volume:35
Page:1069-1076
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ISSN:1087-0156
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Container-title:Nature Biotechnology
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language:en
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Short-container-title:Nat Biotechnol
Author:
Costea Paul IORCID, Zeller Georg, Sunagawa ShinichiORCID, Pelletier Eric, Alberti AdrianaORCID, Levenez Florence, Tramontano Melanie, Driessen Marja, Hercog Rajna, Jung Ferris-Elias, Kultima Jens Roat, Hayward Matthew R, Coelho Luis PedroORCID, Allen-Vercoe Emma, Bertrand Laurie, Blaut Michael, Brown Jillian R M, Carton Thomas, Cools-Portier Stéphanie, Daigneault Michelle, Derrien Muriel, Druesne Anne, de Vos Willem MORCID, Finlay B Brett, Flint Harry J, Guarner Francisco, Hattori Masahira, Heilig Hans, Luna Ruth AnnORCID, van Hylckama Vlieg Johan, Junick Jana, Klymiuk Ingeborg, Langella Philippe, Le Chatelier Emmanuelle, Mai Volker, Manichanh Chaysavanh, Martin Jennifer C, Mery Clémentine, Morita Hidetoshi, O'Toole Paul W, Orvain Céline, Patil Kiran Raosaheb, Penders John, Persson Søren, Pons Nicolas, Popova Milena, Salonen Anne, Saulnier Delphine, Scott Karen P, Singh Bhagirath, Slezak Kathleen, Veiga Patrick, Versalovic James, Zhao Liping, Zoetendal Erwin G, Ehrlich S Dusko, Dore Joel, Bork Peer
Publisher
Springer Science and Business Media LLC
Subject
Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology
Reference39 articles.
1. Meyer, F. et al. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9, 386 (2008). 2. Larsen, N. et al. Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults. PLoS One 5, e9085 (2010). 3. Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55–60 (2012). 4. Forslund, K. et al. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528, 262–266 (2015). 5. Manichanh, C. et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut 55, 205–211 (2006).
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