Extensive sequencing of seven human genomes to characterize benchmark reference materials-Reference-Cited by-同舟云学术

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Published:2016-06-07 Issue:1 Volume:3 Page:
ISSN:2052-4463
Container-title:Scientific Data
language:en
Short-container-title:Sci Data

Author:

Zook Justin M.,Catoe David,McDaniel Jennifer,Vang Lindsay,Spies Noah,Sidow Arend,Weng Ziming,Liu Yuling,Mason Christopher E.,Alexander Noah,Henaff Elizabeth,McIntyre Alexa B.R.,Chandramohan Dhruva,Chen Feng,Jaeger Erich,Moshrefi Ali,Pham Khoa,Stedman William,Liang Tiffany,Saghbini Michael,Dzakula Zeljko,Hastie Alex,Cao Han,Deikus Gintaras,Schadt Eric,Sebra Robert,Bashir Ali,Truty Rebecca M.,Chang Christopher C.,Gulbahce Natali,Zhao Keyan,Ghosh Srinka,Hyland Fiona,Fu Yutao,Chaisson Mark,Xiao Chunlin,Trow Jonathan,Sherry Stephen T.,Zaranek Alexander W.,Ball Madeleine,Bobe Jason,Estep Preston,Church George M.,Marks Patrick,Kyriazopoulou-Panagiotopoulou Sofia,Zheng Grace X.Y.,Schnall-Levin Michael,Ordonez Heather S.,Mudivarti Patrice A.,Giorda Kristina,Sheng Ying,Rypdal Karoline Bjarnesdatter,Salit Marc

Publisher

Springer Science and Business Media LLC

Subject

Library and Information Sciences,Statistics, Probability and Uncertainty,Computer Science Applications,Education,Information Systems,Statistics and Probability

Link

http://www.nature.com/articles/sdata201625.pdf

Reference31 articles.

1. Rasberry, S. D. & Gills, T. E. The certification, development and use of standard reference materials. Spectrochim. Acta Part B At. Spectrosc. 46, 1577–1582 (1991).

2. Mackey, E. A. et al. Certification of NIST Standard Reference Material 1575a Pine Needles and Results of an International Laboratory Comparison. NIST Special Publication 260–156 (2004).

3. Lettieri, T. R., Hartman, A. W., Hembree, G. G. & Marx, E. J. Certification of SRM 1960—Nominal 10 micrometer diameter polystyrene spheres (space beads). Res. Natl. Inst. Stand. Technol. 96, 669 (1991).

4. Zook, J. M. et al. Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls. Nat. Biotechnol. 32, 246–251 (2014).

5. Parikh, H. et al. svclassify: a method to establish benchmark structural variant calls. BMC Genomics 17, 64 (2016).

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