svclassify: a method to establish benchmark structural variant calls-Reference-Cited by-同舟云学术

svclassify: a method to establish benchmark structural variant calls

Published:2016-01-16 Issue:1 Volume:17 Page:
ISSN:1471-2164
Container-title:BMC Genomics
language:en
Short-container-title:BMC Genomics

Author:

Parikh Hemang,Mohiyuddin Marghoob,Lam Hugo Y. K.,Iyer Hariharan,Chen Desu,Pratt Mark,Bartha Gabor,Spies Noah,Losert Wolfgang,Zook Justin M.,Salit Marc

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Biotechnology

Link

http://link.springer.com/content/pdf/10.1186/s12864-016-2366-2

Reference30 articles.

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3. Layer RM, Chiang C, Quinlan AR, Hall IM. LUMPY: a probabilistic framework for structural variant discovery. Genome Biol. 2014;15:R84.

4. Wong K, Keane TM, Stalker J, Adams DJ. Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly. Genome Biol. 2010;11:R128.

5. Mohiyuddin M, Mu JC, Li J, Bani Asadi N, Gerstein MB, Abyzov A, et al. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. Bioinformatics. 2015;31(16):2741–4.

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