Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins-Reference-Cited by-同舟云学术

Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins

Published:2010-11-09 Issue:12 Volume:6 Page:3836-3849
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Banáš Pavel¹,Hollas Daniel¹,Zgarbová Marie¹,Jurečka Petr¹,Orozco Modesto¹,Cheatham Thomas E.¹,Šponer Jiří¹,Otyepka Michal¹

Affiliation:

1. Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacky University Olomouc, tr. 17. listopadu 12, 771 46 Olomouc, Czech Republic, Institute of Biophysics, Academy of Sciences of the Czech Republic, Kralovopolska 135, 612 65 Brno, Czech Republic, Joint Research Program in Computational Biology, Institut de Recerca Biomédica and Barcelona Superocomputing Center, Baldiri i Reixac 10, Barcelona 08028, Spain, Jordi Girona 31, Barcelona 08028, Spain...

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct100481h

Reference84 articles.

1. Analysis of RNA motifs

2. Prediction of RNA secondary structure by free energy minimization

3. CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes.

4. Tetraloops and RNA folding

5. Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".

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