Adjusting the Energy Profile for CH–O Interactions Leads to Improved Stability of RNA Stem-Loop Structures in MD Simulations-Reference-Cited by-同舟云学术

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Adjusting the Energy Profile for CH–O Interactions Leads to Improved Stability of RNA Stem-Loop Structures in MD Simulations

Published:2024-08-07 Issue:33 Volume:128 Page:7921-7933
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Raguette Lauren E.¹²^ORCID,Gunasekera Sarah S.³,Diaz Ventura Rebeca I.²^ORCID,Aminov Ethan²^ORCID,Linzer Jason T.²^ORCID,Parwana Diksha⁴,Wu Qin⁵^ORCID,Simmerling Carlos¹²³^ORCID,Nagan Maria C.²^ORCID

Affiliation:

1. Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York 11794, United States

2. Department of Chemistry, Stony Brook University, Stony Brook, New York 11794, United States

3. Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York 11794, United States

4. Biochemistry & Structural Biology Program, Stony Brook University, Stony Brook, New York 11794, United States

5. Center for Functional Nanomaterials, Brookhaven National Laboratory, Upton, New York 11973, United States

Funder

National Science Foundation

U.S. Department of Health and Human Services

U.S. Department of Energy Office of Science

Henry and Marsha Laufer

Panaphil Foundation

Publisher

American Chemical Society (ACS)

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jpcb.4c01910

Reference99 articles.

1. Central Dogma of Molecular Biology

2. Epidemiological characteristics of human-infective RNA viruses

3. The rise of regulatory RNA

4. RNA in cancer

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