Biasing Simulations of DNA Base Pair Parameters with Application to Propellor Twisting in AT/AT, AA/TT, and AC/GT Steps and Their Uracil Analogs

Author:

Peguero-Tejada Alfredo1,van der Vaart Arjan1ORCID

Affiliation:

1. Department of Chemistry, University of South Florida, 4202 East Fowler Avenue, CHE 205, Tampa, Florida 33620, United States

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Cited by 8 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

1. Isomerization Pathways of a Mismatched Base Pair of A:8OG in Free Duplex DNA;Journal of Chemical Information and Modeling;2024-05-20

2. Insights into elastic properties of coarse-grained DNA models: q-stiffness of cgDNA vs cgDNA+;The Journal of Chemical Physics;2024-04-09

3. Systematic assessment of the flexibility of uracil damaged DNA;Journal of Biomolecular Structure and Dynamics;2023-06-01

4. Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations;Journal of Chemical Theory and Computation;2023-01-25

5. Bending of Canonical and G/T Mismatched DNAs;Journal of Chemical Information and Modeling;2021-11-15

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