Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations
Author:
Affiliation:
1. Soft Matter and Biophysics, Department of Physics and Astronomy, KU Leuven, Celestijnenlaan 200D, 3000 Leuven, Belgium
2. Van’t Hoff Institute for Molecular Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
Publisher
American Chemical Society (ACS)
Subject
Physical and Theoretical Chemistry,Computer Science Applications
Link
https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.2c00889
Reference39 articles.
1. DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations
2. Length Scale Dependence of DNA Mechanical Properties
3. μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA
4. SerraNA: a program to determine nucleic acids elasticity from simulation data
5. A multi-modal coarse grained model of DNA flexibility mappable to the atomistic level
Cited by 5 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献
1. Mechanical response of double-stranded DNA: Bend, twist, and overwind;The Journal of Chemical Physics;2024-08-23
2. Insights into elastic properties of coarse-grained DNA models: q-stiffness of cgDNA vs cgDNA+;The Journal of Chemical Physics;2024-04-09
3. Enhanced sampling strategies for molecular simulation of DNA;WIREs Computational Molecular Science;2024-03
4. Influence of temperature on bend, twist and twist–bend coupling of dsDNA;Physical Chemistry Chemical Physics;2024
5. Mechanisms of DNA-Mediated Allostery;Physical Review Letters;2023-12-07
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3