Toward an Integrated Machine Learning Model of a Proteomics Experiment

Author:

Neely Benjamin A.1ORCID,Dorfer Viktoria2ORCID,Martens Lennart34ORCID,Bludau Isabell5,Bouwmeester Robbin34ORCID,Degroeve Sven34ORCID,Deutsch Eric W.6ORCID,Gessulat Siegfried7,Käll Lukas8ORCID,Palczynski Pawel9,Payne Samuel H.10ORCID,Rehfeldt Tobias Greisager11ORCID,Schmidt Tobias12ORCID,Schwämmle Veit9ORCID,Uszkoreit Julian1314ORCID,Vizcaíno Juan Antonio15ORCID,Wilhelm Mathias16ORCID,Palmblad Magnus17ORCID

Affiliation:

1. National Institute of Standards and Technology, Charleston, South Carolina 29412, United States

2. Bioinformatics Research Group, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria

3. VIB-UGent Center for Medical Biotechnology, VIB, 9000 Ghent, Belgium

4. Department of Biomolecular Medicine, Faculty of Health Sciences and Medicine, Ghent University, 9000 Ghent, Belgium

5. Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany

6. Institute for Systems Biology, Seattle, Washington 98109, United States

7. MSAID GmbH, 10559 Berlin, Germany

8. Science for Life Laboratory, KTH - Royal Institute of Technology, 171 21 Solna, Sweden

9. Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense, Denmark

10. Department of Biology, Brigham Young University, Provo, Utah 84602, United States

11. Institute for Mathematics and Computer Science, University of Southern Denmark, 5230 Odense, Denmark

12. MSAID GmbH, 85748 Garching, Germany

13. Medical Proteome Analysis, Center for Protein Diagnostics (ProDi), Ruhr University Bochum, 44801 Bochum, Germany

14. Medizinisches Proteom-Center, Medical Faculty, Ruhr University Bochum, 44801 Bochum, Germany

15. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom

16. Computational Mass Spectrometry, Technical University of Munich (TUM), 85354 Freising, Germany

17. Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands

Funder

Thermo Fisher Scientific

Nederlandse Organisatie voor Wetenschappelijk Onderzoek

Leiden University Medical Center

Journal of Proteome Research

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

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