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RNA-seq: Basic Bioinformatics Analysis

Published:2018-09-17 Issue:1 Volume:124 Page:e68
ISSN:1934-3639
Container-title:Current Protocols in Molecular Biology
language:en
Short-container-title:Current Protocols in Molecular Biology

Author:

Ji Fei¹²,Sadreyev Ruslan I.¹³

Affiliation:

1. Department of Molecular Biology, Massachusetts General Hospital; Boston Massachusetts

2. Department of Genetics, Harvard Medical School; Boston Massachusetts

3. Department of Pathology, Massachusetts General Hospital and Harvard Medical School; Boston Massachusetts

Funder

National Institutes of Health

Publisher

Wiley

Subject

General Medicine

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1002/cpmb.68/fullpdf

Reference22 articles.

1. HTSeq a Python framework to work with high-throughput sequencing data;Anders;Bioinformatics,2015

2. Near-optimal probabilistic RNA-seq quantification;Bray;Nature Biotechnology,2016

3. RNA-SeQC: RNA-seq metrics for quality control and process optimization;DeLuca;Bioinformatics,2012

4. STAR: Ultrafast universal RNA-seq aligner;Dobin;Bioinformatics,2013

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