Using microarray‐based subtyping methods for breast cancer in the era of high‐throughput RNA sequencing

Author:

Pedersen Christina Bligaard12ORCID,Nielsen Finn Cilius2,Rossing Maria2,Olsen Lars Rønn12

Affiliation:

1. Department of Bio and Health Informatics Technical University of Denmark Kemitorvet, Kongens Lyngby Denmark

2. Center for Genomic Medicine Rigshospitalet ‐ Copenhagen University Hospital Denmark

Funder

Lundbeckfonden

Teknologi og Produktion, Det Frie Forskningsråd

Publisher

Wiley

Subject

Cancer Research,Genetics,Molecular Medicine,General Medicine,Oncology

Reference30 articles.

1. AndrewsS(2010)FastQC: a quality control tool for high throughput sequence data. Available online at:http://www.bioinformatics.babraham.ac.uk/projects/fastqc

2. Trimmomatic: a flexible trimmer for Illumina sequence data

3. Near-optimal probabilistic RNA-seq quantification

4. Correlation between RNA-Seq and microarrays results using TCGA data

5. A survey of best practices for RNA-seq data analysis

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