PIPITS : an automated pipeline for analyses of fungal internal transcribed spacer sequences from the I llumina sequencing platform-Reference-Cited by-同舟云学术

PIPITS : an automated pipeline for analyses of fungal internal transcribed spacer sequences from the I llumina sequencing platform

Published:2015-05-25 Issue:8 Volume:6 Page:973-980
ISSN:2041-210X
Container-title:Methods in Ecology and Evolution
language:en
Short-container-title:Methods Ecol Evol

Author:

Gweon Hyun S.¹,Oliver Anna¹,Taylor Joanne²,Booth Tim¹,Gibbs Melanie¹,Read Daniel S.¹,Griffiths Robert I.¹,Schonrogge Karsten¹

Affiliation:

1. Centre for Ecology & Hydrology Maclean Building Benson Lane Crowmarsh Gifford Wallingford, Oxon OX10 8BB UK

2. Royal Botanic Garden Edinburgh 20A Inverleith Row Edinburgh EH3 5LR UK

Funder

NERC NBAF-W

Tree Health and Plant Biosecurity Initiative project ProTree

NERC as a Daphne Jackson Trust Fellow at RBGE

European Commission project, EcoFINDERS

Publisher

Wiley

Subject

Ecological Modelling,Ecology, Evolution, Behavior and Systematics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12399

Reference31 articles.

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3. An Illumina metabarcoding pipeline for fungi

4. Current state and perspectives of fungal DNA barcoding and rapid identification procedures

5. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

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