A frameshift‐deletion mutation in Reelin causes cerebellar hypoplasia in White Swiss Shepherd dogs

Author:

Littlejohn Mathew D.1ORCID,Sneddon Nick1,Dittmer Keren2,Keehan Mike3,Stephen Melissa1,Drögemüller Michaela4,Garrick Dorian1

Affiliation:

1. AL Rae Centre for Genetics and Breeding Massey University Hamilton New Zealand

2. School of Veterinary Science Massey University Palmerston North New Zealand

3. Te Whatu Ora Health New Zealand Hamilton New Zealand

4. Institute of Genetics, Vetsuisse Faculty University of Bern Bern Switzerland

Abstract

AbstractCerebellar hypoplasia is a heterogeneous neurological condition in which the cerebellum is smaller than usual or not completely developed. The condition can have genetic origins, with Mendelian‐effect mutations described in several mammalian species. Here, we describe a genetic investigation of cerebellar hypoplasia in White Swiss Shepherd dogs, where two affected puppies were identified from a litter with a recent common ancestor on both sides of their pedigree. Whole genome sequencing was conducted for 10 dogs in this family, and filtering of these data based on a recessive transmission hypothesis highlighted five protein‐altering candidate variants – including a frameshift‐deletion of the Reelin (RELN) gene (p.Val947*). Given the status of RELN as a gene responsible for cerebellar hypoplasia in humans, sheep and mice, these data strongly suggest the loss‐of‐function variant as underlying these effects. This variant has not been found in other dog breeds nor in a cohort of European White Swiss Shepherds, suggesting a recent mutation event. This finding will support the genotyping of a more diverse sample of dogs, and should aid future management of the harmful allele through optimised mating schemes.

Publisher

Wiley

Subject

Genetics,Animal Science and Zoology,General Medicine

Reference22 articles.

1. Trimmomatic: a flexible trimmer for Illumina sequence data

2. Broad Institute. (2022) Available from:http://broadinstitute.github.io/picard/[Accessed 19 January 2023].

3. Caetano‐Anolles D.(2023)Hard‐filtering germline short variants – GATK GATK technical documentation – algorithms. Available from:https://gatk.broadinstitute.org/hc/en‐us/articles/360035890471‐Hard‐filtering‐germline‐short‐variants[Accessed 27 March 2023].

4. A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

5. A protein related to extracellular matrix proteins deleted in the mouse mutant reeler

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