iEnhancer-MRBF: Identifying enhancers and their strength with a multiple Laplacian-regularized radial basis function network-Reference-Cited by-同舟云学术

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iEnhancer-MRBF: Identifying enhancers and their strength with a multiple Laplacian-regularized radial basis function network

Published:2022-12 Issue: Volume:208 Page:1-8
ISSN:1046-2023
Container-title:Methods
language:en
Short-container-title:Methods

Author:

Xiao Zhichao,Wang Lizhuang,Ding Yijie,Yu Liang

Funder

National Natural Science Foundation of China

Fundamental Research Funds for the Central Universities

Zhuzhou Municipal People's Government

Publisher

Elsevier BV

Subject

General Biochemistry, Genetics and Molecular Biology,Molecular Biology

Reference86 articles.

1. Expression of a β-globin gene is enhanced by remote SV40 DNA sequences;Banerji;Cell,1981

2. SEA: a super-enhancer archive;Wei;Nucleic Acids Res.,2016

3. iEnhancer-EBLSTM: Identifying Enhancers and Strengths by Ensembles of Bidirectional Long Short-Term Memory;Niu;Front. Genet.,2021

4. iEnhancer-XG: Interpretable sequence-based enhancers and their strength predictor;Cai;Bioinformatics,2021

5. Predicting enhancer-promoter interactions by deep learning and matching heuristic;Min;Brief Bioinform,2021

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1. A Comparative Review and Analysis of Computational Predictors for Identification of Enhancer and their Strength;Current Bioinformatics;2024-06-04

2. ADH-Enhancer: an attention-based deep hybrid framework for enhancer identification and strength prediction;Briefings in Bioinformatics;2024-01-22

3. Identification of drug-side effect association via correntropy-loss based matrix factorization with neural tangent kernel;Methods;2023-11

4. Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning;Frontiers in Genetics;2023-08-21

5. Multi-view local hyperplane nearest neighbor model based on independence criterion for identifying vesicular transport proteins;International Journal of Biological Macromolecules;2023-08

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