Potential of high-throughput sequencing for broad-range detection of pathogenic bacteria in spices and herbs

Author:

Planý M.,Šoltys K.,Budiš J.,Mader A.,Szemes T.,Siekel P.,Kuchta T.

Publisher

Elsevier BV

Subject

Food Science,Biotechnology

Reference19 articles.

1. Metaxa2: Improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data;Bengtsson-Palme;Molecular Ecology Resources,2015

2. Trimmomatic: A flexible trimmer for Illumina sequence data;Bolger;Bioinformatics,2014

3. Specific amplification of bacterial DNA by optimized so-called universal bacterial primers in samples rich of plant DNA;Dorn-In;Journal of Microbiological Methods,2015

4. Scientific opinion on the risk posed by pathogens in food of non-animal origin. Part 1 (outbreak data analysis and risk ranking of food/pathogen combinations);EFSA;EFSA Journal,2013

5. Ranking of low moisture foods in support of microbiological risk management;Food and Agriculture Organization of the United Nations (FAO),2014

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