Evaluation of protein descriptors in computer-aided rational protein engineering tasks and its application in property prediction in SARS-CoV-2 spike glycoprotein-Reference-Cited by-同舟云学术

Evaluation of protein descriptors in computer-aided rational protein engineering tasks and its application in property prediction in SARS-CoV-2 spike glycoprotein

Published:2022 Issue: Volume:20 Page:788-798
ISSN:2001-0370
Container-title:Computational and Structural Biotechnology Journal
language:en
Short-container-title:Computational and Structural Biotechnology Journal

Author:

Lim Hocheol,Jeon Hyeon-Nae,Lim Seungcheol,Jang Yuil,Kim Taehee,Cho Hyein,Pan Jae-Gu,No Kyoung Tai

Funder

Korea Institute for Advancement of Technology

Ministry of Trade, Industry and Energy

Publisher

Elsevier BV

Subject

Computer Science Applications,Genetics,Biochemistry,Structural Biology,Biophysics,Biotechnology

Reference60 articles.

1. Machine-learning-guided directed evolution for protein engineering;Yang;Nat Methods,2019

2. From directed evolution to computational enzyme engineering—a review;Chowdhury;AIChE J,2020

3. Deep dive into machine learning models for protein engineering;Xu;J Chem Inf Model,2020

4. Unified rational protein engineering with sequence-based deep representation learning;Alley;Nat Methods,2019

5. AAindex: amino acid index database, progress report 2008;Kawashima;Nucl Acids Res,2007

Cited by 12 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Machine Learning Integrating Protein Structure, Sequence, and Dynamics to Predict the Enzyme Activity of Bovine Enterokinase Variants;Journal of Chemical Information and Modeling;2024-02-22

2. Fragment molecular orbital-based variational quantum eigensolver for quantum chemistry in the age of quantum computing;Scientific Reports;2024-01-29

3. Fragment Molecular Orbital-based Variational Quantum Eigensolver for Quantum Chemistry in the Age of Quantum Computing;2023-12-05

4. 3DDPDs: describing protein dynamics for proteochemometric bioactivity prediction. A case for (mutant) G protein-coupled receptors;Journal of Cheminformatics;2023-08-28

5. Struktur‐ und Daten‐basiertes Protein Engineering von Transaminasen zur Verbesserung von Aktivität und Stereoselektivität;Angewandte Chemie;2023-05-03