Complete microbial genomes for public health in Australia and the Southwest Pacific-Reference-Cited by-同舟云学术

Complete microbial genomes for public health in Australia and the Southwest Pacific

Published:2020-12-01 Issue:12 Volume:6 Page:
ISSN:2057-5858
Container-title:Microbial Genomics
language:en
Short-container-title:

Author:

Baines Sarah L.¹^ORCID,da Silva Anders Gonçalves²^ORCID,Carter Glen P.¹^ORCID,Jennison Amy³^ORCID,Rathnayake Irani³^ORCID,Graham Rikki M.³^ORCID,Sintchenko Vitali⁴⁵^ORCID,Wang Qinning⁵^ORCID,Rockett Rebecca J.⁴⁵^ORCID,Timms Verlaine J.⁴⁵^ORCID,Martinez Elena⁵,Ballard Susan²^ORCID,Tomita Takehiro²^ORCID,Isles Nicole²^ORCID,Horan Kristy A.²,Pitchers William²^ORCID,Stinear Timothy P.¹^ORCID,Williamson Deborah A.²¹^ORCID,Howden Benjamin P.²¹^ORCID,Seemann Torsten¹²^ORCID,

Affiliation:

1. Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3001, Australia

2. Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at the Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Parkville, Victoria 3001, Australia

3. Public Health Microbiology, Queensland Reference Centre for Microbial and Public Health Genomics, Forensic and Scientific Services, Queensland Department of Health, Archerfield, Queensland 4108, Australia

4. Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Sydney, New South Wales 2006, Australia

5. Centre for Infectious Diseases and Microbiology – Public Health, Westmead Hospital and NSW Health Pathology, Sydney, New South Wales 2145, Australia

Abstract

Complete genomes of microbial pathogens are essential for the phylogenomic analyses that increasingly underpin core public health laboratory activities. Here, we announce a BioProject (PRJNA556438) dedicated to sharing complete genomes chosen to represent a range of pathogenic bacteria with regional importance to Australia and the Southwest Pacific; enriching the catalogue of globally available complete genomes for public health while providing valuable strains to regional public health microbiology laboratories. In this first step, we present 26 complete high-quality bacterial genomes. Additionally, we describe here a framework for reconstructing complete microbial genomes and highlight some of the challenges and considerations for accurate and reproducible genome reconstruction.

Publisher

Microbiology Society

Subject

General Medicine

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