Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility-Reference-Cited by-同舟云学术

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

Published:2020-12-18 Issue:6523 Volume:370 Page:
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Warren Wesley C.¹²³^ORCID,Harris R. Alan⁴^ORCID,Haukness Marina⁵^ORCID,Fiddes Ian T.⁶^ORCID,Murali Shwetha C.⁷⁸,Fernandes Jason⁹^ORCID,Dishuck Philip C.⁷^ORCID,Storer Jessica M.¹⁰¹¹^ORCID,Raveendran Muthuswamy⁴^ORCID,Hillier LaDeana W.⁷,Porubsky David⁷,Mao Yafei⁷^ORCID,Gordon David⁷⁸^ORCID,Vollger Mitchell R.⁷^ORCID,Lewis Alexandra P.⁷^ORCID,Munson Katherine M.⁷^ORCID,DeVogelaere Elizabeth⁵,Armstrong Joel⁵^ORCID,Diekhans Mark⁵^ORCID,Walker Jerilyn A.¹⁰,Tomlinson Chad¹²^ORCID,Graves-Lindsay Tina A.¹²,Kremitzki Milinn¹²,Salama Sofie R.⁹^ORCID,Audano Peter A.⁷^ORCID,Escalona Merly⁹^ORCID,Maurer Nicholas W.⁹^ORCID,Antonacci Francesca¹³^ORCID,Mercuri Ludovica¹³^ORCID,Maggiolini Flavia A. M.¹³^ORCID,Catacchio Claudia Rita¹³^ORCID,Underwood Jason G.¹⁴,O’Connor David H.¹⁵^ORCID,Sanders Ashley D.¹⁶^ORCID,Korbel Jan O.¹⁶,Ferguson Betsy¹⁷^ORCID,Kubisch H. Michael¹⁸^ORCID,Picker Louis¹⁹^ORCID,Kalin Ned H.²⁰,Rosene Douglas²¹,Levine Jon²²²³^ORCID,Abbott David H.²³²⁴,Gray Stanton B.²⁵^ORCID,Sanchez Mar M.²⁶²⁷^ORCID,Kovacs-Balint Zsofia A.²⁶,Kemnitz Joseph W.²³²⁸^ORCID,Thomasy Sara M.²⁹³⁰^ORCID,Roberts Jeffrey A.³¹^ORCID,Kinnally Erin L.³¹³²,Capitanio John P.³¹³²^ORCID,Skene J. H. Pate³³^ORCID,Platt Michael³⁴^ORCID,Cole Shelley A.³⁵^ORCID,Green Richard E.⁹^ORCID,Ventura Mario¹³^ORCID,Wiseman Roger W.¹⁵^ORCID,Paten Benedict⁵^ORCID,Batzer Mark A.¹⁰^ORCID,Rogers Jeffrey⁴^ORCID,Eichler Evan E.⁷⁸^ORCID

Affiliation:

1. Department of Animal Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.

2. Department of Surgery, School of Medicine, University of Missouri, Columbia, MO 65211, USA.

3. Institute of Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA.

4. Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

5. Computational Genomics Laboratory, University of California–Santa Cruz, Santa Cruz, CA 95064, USA.

6. Inscripta Inc., Boulder, CO 80301, USA.

7. Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.

8. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

9. Department of Biomolecular Engineering, University of California–Santa Cruz, Santa Cruz, CA 95064, USA.

10. Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

11. Institue for Systems Biology, Seattle, WA 98109, USA.

12. McDonnell Genome Institute, Washington University, St. Louis, MO 63108, USA.

13. Department of Biology, University of Bari 'Aldo Moro', 70125 Bari, Italy.

14. Pacific Biosciences of California, Seattle, WA 94025, USA.

15. Department of Pathology and Laboratory Medicine, Wisconsin National Primate Research Center, University of Wisconsin–Madison, Madison, WI 53711, USA.

16. European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.

17. Division of Genetics, Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR 97006, USA.

18. Tulane National Primate Research Center, Covington, LA 70433, USA.

19. Oregon National Primate Research Center and Vaccine and Gene Therapy Institute, Oregon Health Sciences University, Beaverton, OR 97006, USA.

20. Department of Psychiatry, University of Wisconsin School of Medicine and Public Health, Madison, WI 53719, USA.

21. Department of Anatomy and Neurobiology, Boston University School of Medicine, Boston, MA 02118, USA.

22. Department of Neuroscience, University of Wisconsin, Madison, WI 53175, USA.

23. Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53171, USA.

24. Department of Obstetrics and Gynecology, Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53715, USA.

25. The University of Texas MD Anderson Cancer Center, Michale E. Keeling Center for Comparative Medicine and Research, Bastrop, TX 78602, USA.

26. Yerkes National Primate Research Center, Atlanta, GA 30329, USA.

27. Department of Psychiatry and Behavioral Sciences, Emory University School of Medicine, Atlanta, GA 30329, USA.

28. Department of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, USA.

29. Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California–Davis, Davis, CA 95616, USA.

30. Department of Ophthalmology and Vision Science, School of Medicine, University of California–Davis, Davis, CA 95817, USA.

31. California National Primate Research Center, Davis, CA 95616, USA.

32. Department of Psychology, University of California, Davis, CA 95616, USA.

33. Department of Neurobiology, Duke University School of Medicine, Durham, NC 27710, USA.

34. Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

35. Population Health Program, Texas Biomedical Research Institute and Southwest National Primate Research Center, San Antonio, TX 78227, USA.

Abstract

A high-quality rhesus macaque genome Genome technology has improved substantially since the first full organismal genomes were generated. Applying new technology, Warren et al. refined the genome of the rhesus macaque, a model nonhuman primate. Long-read technology and other recent advances in sequencing technology were applied to generate a genome with far fewer gaps and helped to refine the locations and numbers of repetitive elements. Furthermore, the authors performed resequencing among populations to identify the genetic variability of the rhesus macaque. Thus, a previously incomplete and inaccurate set of sequence information is now fully resolved, improving gene mapping for biomedical and comparative genetic studies. Science , this issue p. eabc6617

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference79 articles.

1. Primate segmental duplications: crucibles of evolution, diversity and disease

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3. The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences

4. Whole genome sequencing predicts novel human disease models in rhesus macaques

5. High-resolution comparative analysis of great ape genomes

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