Optimized analysis parameters of variant calling for whole genome-based phylogeny of Mycobacteroides abscessus-Reference-Cited by-同舟云学术

Optimized analysis parameters of variant calling for whole genome-based phylogeny of Mycobacteroides abscessus

Published:2022-02-22 Issue:3 Volume:204 Page:
ISSN:0302-8933
Container-title:Archives of Microbiology
language:en
Short-container-title:Arch Microbiol

Author:

Kaewprasert Orawee,Tongsima Sissades,Ong Rick Twee-Hee,Faksri Kiatichai^ORCID

Funder

Thailand and General Supportive Grant, Khon Kaen University, Thailand 2019

The National University of Singapore Start-Up Grant

the Royal Golden Jubilee (RGJ)-Ph.D. program Grant of the Thailand Research Fund

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Molecular Biology,General Medicine,Biochemistry,Microbiology

Link

https://link.springer.com/content/pdf/10.1007/s00203-022-02792-2.pdf

Reference25 articles.

1. Ananta P et al (2018) Analysis of drug-susceptibility patterns and gene sequences associated with clarithromycin and amikacin resistance in serial Mycobacterium abscessus isolates from clinical specimens from Northeast Thailand. PLoS One 13:e0208053–e0208053. https://doi.org/10.1371/journal.pone.0208053

2. Andrews S (2010) FastQC: a quality control tool for high throughput sequence data [Online]. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/. Accessed 7 Dec 2018

3. Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170

4. Bryant JM et al (2016) Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium. Science 354:751–757. https://doi.org/10.1126/science.aaf8156

5. Chew KL, Cheng JWS, Hudaa Osman N, Lin RTP, Teo JWP (2017) Predominance of clarithromycin-susceptible Mycobacterium massiliense subspecies: characterization of the Mycobacterium abscessus complex at a tertiary acute care hospital. J Med Microbiol 66:1443–1447. https://doi.org/10.1099/jmm.0.000576

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