Efficient System Wide Metabolic Pathway Comparisons in Multiple Microbes Using Genome to KEGG Orthology (G2KO) Pipeline Tool-Reference-Cited by-同舟云学术

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Efficient System Wide Metabolic Pathway Comparisons in Multiple Microbes Using Genome to KEGG Orthology (G2KO) Pipeline Tool

Published:2020-07-06 Issue:3 Volume:12 Page:311-322
ISSN:1913-2751
Container-title:Interdisciplinary Sciences: Computational Life Sciences
language:en
Short-container-title:Interdiscip Sci Comput Life Sci

Author:

Joshi Chandrakant,Sharma Swati,MacKinnon Neil,Masakapalli Shyam Kumar^ORCID

Funder

Department of Biotechnology , Ministry of Science and Technology

Bundesministerium für Bildung und Forschung

Ministerium für Wissenschaft, Forschung und Kunst Baden-Württemberg

Indian Institute of Technology Mandi

Publisher

Springer Science and Business Media LLC

Subject

Health Informatics,Computer Science Applications,General Biochemistry, Genetics and Molecular Biology

Link

http://link.springer.com/content/pdf/10.1007/s12539-020-00375-7.pdf

Reference39 articles.

1. Kanehisa M (2017) Enzyme annotation and metabolic reconstruction using KEGG. Protein Funct Predict Methods Protoc. https://doi.org/10.1007/978-1-4939-7015-5_11

2. Xie C, Mao X, Huang J et al (2011) KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res 39:W316–W322. https://doi.org/10.1093/nar/gkr483

3. Bono H, Ogata H, Goto S, Kanehisa M (1998) Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res 8:203–210. https://doi.org/10.1101/GR.8.3.203

4. Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27–30. https://doi.org/10.1093/nar/28.1.27

5. Kanehisa M, Sato Y, Kawashima M et al (2015) KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res 44:D457–D462. https://doi.org/10.1093/nar/gkv1070

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