The Complete Genome Sequence of Chlorophonia sclateri (Fringillidae, Passeriformes), the Puerto Rican Euphonia

Author:

Diaz Mendez Sheylda N1,Hains Taylor23,Pirro Stacy4,Bates John23,Hackett Shannon23

Affiliation:

1. Universidad Ana G. Méndez

2. Field Museum of Natural History

3. University of Chicago

4. Iridian Genomes

Abstract

The Puerto Rican Euphonia (Chlorophonia sclateri) was recognized as an endemic species in 2023 based solely on morphological differences. A brightly plumaged finch that inhabits a variety of habitats, including lowland dry, scrub forests and shade-coffee plantations (Carlo et. al 2004). To provide molecular evidence for the genetic comparison of Antillean Euphonias, we present the whole genome sequence of Chlorophonia sclateri. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28963854) and assembled genome (JBFPDU000000000).

Publisher

Naturalis Historia Publishing

Reference4 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing;A. Bankevich;J Comput Biol,2012

2. Trimmomatic: A flexible trimmer for Illumina Sequence Data;A. M. Bolger;Bioinformatics,2014

3. Influences of fruit diversity and abundance on bird use of two shaded coffee plantations;T. A. Carlo;Biotropica,2004

4. Zanfona, a genome finishing process for use with paired-end short reads;M. Kieras,2021

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