The Complete Genome Sequence of Protonotaria citrea, the Prothonotary Warbler

Author:

Antonson Nicholas D.1,Hauber Mark E.2,Schelsky Wendy M.2,Scharf Hannah M.1,Bulluck Lesley3,Viverette Catherine3,Pirro Stacy4,Boves Than J.5

Affiliation:

1. University of Illinois at Urbana-Champaign

2. Department of Evolution, Ecology, and Behavior, University of Illinois at Urbana-Champaign; Prairie Research Institute, University of Illinois at Urbana-Champaign

3. Virginia Commonwealth University

4. Iridian Genomes

5. Arkansas State University

Abstract

The Prothonotary Warbler (Protonotaria citrea) is a nearctic-neotropical migratory songbird that breeds in forested swamps and riparian areas in the eastern-central United States and southern Ontario. It is the sole eastern North American wood-warbler that nests in cavities, the only species in the genus Protonotaria, and is one of the few hole-nesting hosts of the Brown-headed Cowbird (Molothrus ater), an obligate brood parasite. We present the whole genome sequence of this wood-warbler species. Illumina sequencing was performed on a genetic sample from a single female individual. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR19579445) and Assembly (JAOYNP000000000).

Publisher

Naturalis Historia Publishing

Reference10 articles.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing;Anton Bankevich;Journal of Computational Biology,2012

2. Trimmomatic: A Flexible Trimmer for Illumina Sequence Data;Anthony M. Bolger;Bioinformatics,2014

3. Prothonotary Warbler nestling growth and condition in response to variation in aquatic and terrestrial prey availability;Jenna C. Dodson;Ecology and Evolution,2016

4. Pete Dunne's Essential Field Guide Companion;Pete Dunne,2006

5. Warmer April Temperatures on Breeding Grounds Promote Earlier Nesting in a Long-Distance Migratory Bird, the Prothonotary Warbler;Jeffrey P. Hoover;Frontiers in Ecology and Evolution,2020

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