Enabling particle applications for exascale computing platforms

Author:

Mniszewski Susan M1ORCID,Belak James2,Fattebert Jean-Luc3,Negre Christian FA1,Slattery Stuart R3,Adedoyin Adetokunbo A1,Bird Robert F1,Chang Choongseok4,Chen Guangye1,Ethier Stéphane4,Fogerty Shane1,Habib Salman5,Junghans Christoph1,Lebrun-Grandié Damien3,Mohd-Yusof Jamaludin1,Moore Stan G6,Osei-Kuffuor Daniel2,Plimpton Steven J6,Pope Adrian5,Reeve Samuel Temple3,Ricketson Lee2,Scheinberg Aaron7,Sharma Amil Y4,Wall Michael E1

Affiliation:

1. Los Alamos National Laboratory, Los Alamos, NM, USA

2. Lawrence Livermore National Laboratory, Livermore, CA, USA

3. Oak Ridge National Laboratory, Oak Ridge, TN, USA

4. Princeton Plasma Physics Laboratory, Princeton, NJ, USA

5. Argonne National Laboratory, Lemont, IL, USA

6. Sandia National Laboratories, Albuquerque, NM, USA

7. Jubilee Development, Washington, DC, USA

Abstract

The Exascale Computing Project (ECP) is invested in co-design to assure that key applications are ready for exascale computing. Within ECP, the Co-design Center for Particle Applications (CoPA) is addressing challenges faced by particle-based applications across four “sub-motifs”: short-range particle–particle interactions (e.g., those which often dominate molecular dynamics (MD) and smoothed particle hydrodynamics (SPH) methods), long-range particle–particle interactions (e.g., electrostatic MD and gravitational N-body), particle-in-cell (PIC) methods, and linear-scaling electronic structure and quantum molecular dynamics (QMD) algorithms. Our crosscutting co-designed technologies fall into two categories: proxy applications (or “apps”) and libraries. Proxy apps are vehicles used to evaluate the viability of incorporating various types of algorithms, data structures, and architecture-specific optimizations and the associated trade-offs; examples include ExaMiniMD, CabanaMD, CabanaPIC, and ExaSP2. Libraries are modular instantiations that multiple applications can utilize or be built upon; CoPA has developed the Cabana particle library, PROGRESS/BML libraries for QMD, and the SWFFT and fftMPI parallel FFT libraries. Success is measured by identifiable “lessons learned” that are translated either directly into parent production application codes or into libraries, with demonstrated performance and/or productivity improvement. The libraries and their use in CoPA’s ECP application partner codes are also addressed.

Funder

Exascale Computing Project

Argonne National Laboratory

Lawrence Livermore National Laboratory

Oak Ridge National Laboratory

Princeton Plasma Physics Laboratory

National Nuclear Security Administration

National Energy Research Scientific Computing Center

Publisher

SAGE Publications

Subject

Hardware and Architecture,Theoretical Computer Science,Software

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