Use cases of lossy compression for floating-point data in scientific data sets

Author:

Cappello Franck12ORCID,Di Sheng1,Li Sihuan3,Liang Xin3,Gok Ali Murat4,Tao Dingwen5,Yoon Chun Hong6,Wu Xin-Chuan7,Alexeev Yuri1,Chong Frederic T7

Affiliation:

1. Argonne National Laboratory, Lemont, IL, USA

2. Department of Computer Science, University of Illinois Urbana-Champaign, Urbana, IL, USA

3. Department of Computer Science and Engineering, University of California, Riverside, CA, USA

4. Department of Electrical Engineering and Computer Science, Northwestern University, Evanston, IL, USA

5. Department of Computer Science, University of Alabama, Tuscaloosa, AL, USA

6. Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA

7. Department of Computer Science, University of Chicago, Chicago, IL, USA

Abstract

Architectural and technological trends of systems used for scientific computing call for a significant reduction of scientific data sets that are composed mainly of floating-point data. This article surveys and presents experimental results of currently identified use cases of generic lossy compression to address the different limitations of scientific computing systems. The article shows from a collection of experiments run on parallel systems of a leadership facility that lossy data compression not only can reduce the footprint of scientific data sets on storage but also can reduce I/O and checkpoint/restart times, accelerate computation, and even allow significantly larger problems to be run than without lossy compression. These results suggest that lossy compression will become an important technology in many aspects of high performance scientific computing. Because the constraints for each use case are different and often conflicting, this collection of results also indicates the need for more specialization of the compression pipelines.

Funder

DOE/NNSA Exascale Computing Project

Publisher

SAGE Publications

Subject

Hardware and Architecture,Theoretical Computer Science,Software

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